Selected Publications

Trajectory-based differential expression analysis for single-cell sequencing data

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference


Improving replicability in single-cell RNA-Seq cell type discovery with Dune

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

A multimodal cell census and atlas of the mammalian primary motor cortex